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      "source_file": ".agents/skills/graphify/references/hooks.md",
      "source_location": "L21"
    },
    {
      "id": "agents_skills_graphify_references_hooks_graphify_reference_commit_hook_and_native_claude_md_integration",
      "label": "graphify reference: commit hook and native CLAUDE.md integration",
      "_origin": "ast",
      "community": 29,
      "community_name": "Graphify Hooks",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "graphify reference: commit hook and native claude.md integration",
      "source_file": ".agents/skills/graphify/references/hooks.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_skill",
      "label": "graphify/SKILL.md",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "frontmatter": {
        "name": "graphify",
        "description": "Use for any question about a codebase, its architecture, file relationships, or project content \u2014 especially when graphify-out/ exists, where the question should be treated as a graphify query first. Turns any input (code, docs, papers, images, videos) into a persistent knowledge graph with god nodes, community detection, and query/path/explain tools."
      },
      "node_kind": "page",
      "norm_label": "graphify/skill.md",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_skill_for_graphify_add_and_watch",
      "label": "For /graphify add and --watch",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "for /graphify add and --watch",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L695"
    },
    {
      "id": "agents_skills_graphify_skill_for_graphify_query",
      "label": "For /graphify query",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "for /graphify query",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L683"
    },
    {
      "id": "agents_skills_graphify_skill_for_the_commit_hook_and_native_claude_md_integration",
      "label": "For the commit hook and native CLAUDE.md integration",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "for the commit hook and native claude.md integration",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L701"
    },
    {
      "id": "agents_skills_graphify_skill_for_update_and_cluster_only",
      "label": "For --update and --cluster-only",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "for --update and --cluster-only",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L677"
    },
    {
      "id": "agents_skills_graphify_skill_graphify",
      "label": "/graphify",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "/graphify",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L6"
    },
    {
      "id": "agents_skills_graphify_skill_honesty_rules",
      "label": "Honesty Rules",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "honesty rules",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L707"
    },
    {
      "id": "agents_skills_graphify_skill_interpreter_guard_for_subcommands",
      "label": "Interpreter guard for subcommands",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "interpreter guard for subcommands",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L659"
    },
    {
      "id": "agents_skills_graphify_skill_part_a_structural_extraction_for_code_files",
      "label": "Part A - Structural extraction for code files",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "part a - structural extraction for code files",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L170"
    },
    {
      "id": "agents_skills_graphify_skill_part_b_semantic_extraction_parallel_subagents",
      "label": "Part B - Semantic extraction (parallel subagents)",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "part b - semantic extraction (parallel subagents)",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L196"
    },
    {
      "id": "agents_skills_graphify_skill_part_c_merge_ast_semantic_into_final_extraction",
      "label": "Part C - Merge AST + semantic into final extraction",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "part c - merge ast + semantic into final extraction",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L359"
    },
    {
      "id": "agents_skills_graphify_skill_step_0_github_repos_and_multi_path_merge_only_if_a_url_or_several_paths",
      "label": "Step 0 - GitHub repos and multi-path merge (only if a URL or several paths)",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 0 - github repos and multi-path merge (only if a url or several paths)",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L61"
    },
    {
      "id": "agents_skills_graphify_skill_step_1_ensure_graphify_is_installed",
      "label": "Step 1 - Ensure graphify is installed",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 1 - ensure graphify is installed",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L65"
    },
    {
      "id": "agents_skills_graphify_skill_step_2_5_video_and_audio_only_if_video_files_detected",
      "label": "Step 2.5 - Video and audio (only if video files detected)",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 2.5 - video and audio (only if video files detected)",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L147"
    },
    {
      "id": "agents_skills_graphify_skill_step_2_detect_files",
      "label": "Step 2 - Detect files",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 2 - detect files",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L107"
    },
    {
      "id": "agents_skills_graphify_skill_step_3_extract_entities_and_relationships",
      "label": "Step 3 - Extract entities and relationships",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 3 - extract entities and relationships",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L151"
    },
    {
      "id": "agents_skills_graphify_skill_step_4_5_graph_health_check_read_only_integrity_gate",
      "label": "Step 4.5 - Graph health check (read-only integrity gate)",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 4.5 - graph health check (read-only integrity gate)",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L456"
    },
    {
      "id": "agents_skills_graphify_skill_step_4_build_graph_cluster_analyze_generate_outputs",
      "label": "Step 4 - Build graph, cluster, analyze, generate outputs",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 4 - build graph, cluster, analyze, generate outputs",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L393"
    },
    {
      "id": "agents_skills_graphify_skill_step_5_label_communities",
      "label": "Step 5 - Label communities",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 5 - label communities",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L482"
    },
    {
      "id": "agents_skills_graphify_skill_step_6_generate_obsidian_vault_opt_in_html",
      "label": "Step 6 - Generate Obsidian vault (opt-in) + HTML",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 6 - generate obsidian vault (opt-in) + html",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L531"
    },
    {
      "id": "agents_skills_graphify_skill_step_9_save_manifest_update_cost_tracker_clean_up_and_report",
      "label": "Step 9 - Save manifest, update cost tracker, clean up, and report",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 9 - save manifest, update cost tracker, clean up, and report",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L557"
    },
    {
      "id": "agents_skills_graphify_skill_steps_6b_8_wiki_neo4j_falkordb_svg_graphml_mcp_benchmark_only_on_their_flags",
      "label": "Steps 6b-8 - Wiki, Neo4j, FalkorDB, SVG, GraphML, MCP, benchmark (only on their flags)",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "steps 6b-8 - wiki, neo4j, falkordb, svg, graphml, mcp, benchmark (only on their flags)",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L551"
    },
    {
      "id": "agents_skills_graphify_skill_usage",
      "label": "Usage",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "usage",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L10"
    },
    {
      "id": "agents_skills_graphify_skill_what_graphify_is_for",
      "label": "What graphify is for",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "what graphify is for",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L45"
    },
    {
      "id": "agents_skills_graphify_skill_what_you_must_do_when_invoked",
      "label": "What You Must Do When Invoked",
      "_origin": "ast",
      "community": 3,
      "community_name": "Graphify Commands",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "what you must do when invoked",
      "source_file": ".agents/skills/graphify/SKILL.md",
      "source_location": "L49"
    },
    {
      "id": "agents_skills_graphify_references_update",
      "label": "update.md",
      "_origin": "ast",
      "community": 30,
      "community_name": "Graphify Updates",
      "file_type": "document",
      "node_kind": "page",
      "norm_label": "update.md",
      "source_file": ".agents/skills/graphify/references/update.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_references_update_for_cluster_only",
      "label": "For --cluster-only",
      "_origin": "ast",
      "community": 30,
      "community_name": "Graphify Updates",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "for --cluster-only",
      "source_file": ".agents/skills/graphify/references/update.md",
      "source_location": "L202"
    },
    {
      "id": "agents_skills_graphify_references_update_for_update_incremental_re_extraction",
      "label": "For --update (incremental re-extraction)",
      "_origin": "ast",
      "community": 30,
      "community_name": "Graphify Updates",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "for --update (incremental re-extraction)",
      "source_file": ".agents/skills/graphify/references/update.md",
      "source_location": "L5"
    },
    {
      "id": "agents_skills_graphify_references_update_graphify_reference_incremental_update_and_cluster_only",
      "label": "graphify reference: incremental update and cluster-only",
      "_origin": "ast",
      "community": 30,
      "community_name": "Graphify Updates",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "graphify reference: incremental update and cluster-only",
      "source_file": ".agents/skills/graphify/references/update.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_ponytail_debt_skill",
      "label": "ponytail-debt/SKILL.md",
      "_origin": "ast",
      "community": 31,
      "community_name": "Ponytail Debt",
      "file_type": "document",
      "frontmatter": {
        "name": "ponytail-debt",
        "description": ">"
      },
      "node_kind": "page",
      "norm_label": "ponytail-debt/skill.md",
      "source_file": ".agents/skills/ponytail-debt/SKILL.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_ponytail_debt_skill_boundaries",
      "label": "Boundaries",
      "_origin": "ast",
      "community": 31,
      "community_name": "Ponytail Debt",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "boundaries",
      "source_file": ".agents/skills/ponytail-debt/SKILL.md",
      "source_location": "L40"
    },
    {
      "id": "agents_skills_ponytail_debt_skill_output",
      "label": "Output",
      "_origin": "ast",
      "community": 31,
      "community_name": "Ponytail Debt",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "output",
      "source_file": ".agents/skills/ponytail-debt/SKILL.md",
      "source_location": "L25"
    },
    {
      "id": "agents_skills_ponytail_debt_skill_scan",
      "label": "Scan",
      "_origin": "ast",
      "community": 31,
      "community_name": "Ponytail Debt",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "scan",
      "source_file": ".agents/skills/ponytail-debt/SKILL.md",
      "source_location": "L15"
    },
    {
      "id": "agents_skills_graphify_references_github_and_merge",
      "label": "github-and-merge.md",
      "_origin": "ast",
      "community": 32,
      "community_name": "Repository Merge",
      "file_type": "document",
      "node_kind": "page",
      "norm_label": "github-and-merge.md",
      "source_file": ".agents/skills/graphify/references/github-and-merge.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_references_github_and_merge_graphify_reference_github_clone_and_cross_repo_merge",
      "label": "graphify reference: GitHub clone and cross-repo merge",
      "_origin": "ast",
      "community": 32,
      "community_name": "Repository Merge",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "graphify reference: github clone and cross-repo merge",
      "source_file": ".agents/skills/graphify/references/github-and-merge.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_references_github_and_merge_step_0_clone_github_repo_s_only_if_a_github_url_was_given",
      "label": "Step 0 - Clone GitHub repo(s) (only if a GitHub URL was given)",
      "_origin": "ast",
      "community": 32,
      "community_name": "Repository Merge",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 0 - clone github repo(s) (only if a github url was given)",
      "source_file": ".agents/skills/graphify/references/github-and-merge.md",
      "source_location": "L5"
    },
    {
      "id": "agents_skills_graphify_references_transcribe",
      "label": "transcribe.md",
      "_origin": "ast",
      "community": 33,
      "community_name": "Media Transcription",
      "file_type": "document",
      "node_kind": "page",
      "norm_label": "transcribe.md",
      "source_file": ".agents/skills/graphify/references/transcribe.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_references_transcribe_graphify_reference_transcribe_video_and_audio",
      "label": "graphify reference: transcribe video and audio",
      "_origin": "ast",
      "community": 33,
      "community_name": "Media Transcription",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "graphify reference: transcribe video and audio",
      "source_file": ".agents/skills/graphify/references/transcribe.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_references_transcribe_step_2_5_transcribe_video_audio_files_only_if_video_files_detected",
      "label": "Step 2.5 - Transcribe video / audio files (only if video files detected)",
      "_origin": "ast",
      "community": 33,
      "community_name": "Media Transcription",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "step 2.5 - transcribe video / audio files (only if video files detected)",
      "source_file": ".agents/skills/graphify/references/transcribe.md",
      "source_location": "L5"
    },
    {
      "id": "agents_skills_graphify_references_extraction_spec",
      "label": "extraction-spec.md",
      "_origin": "ast",
      "community": 34,
      "community_name": "Extraction Specification",
      "file_type": "document",
      "node_kind": "page",
      "norm_label": "extraction-spec.md",
      "source_file": ".agents/skills/graphify/references/extraction-spec.md",
      "source_location": "L1"
    },
    {
      "id": "agents_skills_graphify_references_extraction_spec_graphify_reference_extraction_subagent_prompt",
      "label": "graphify reference: extraction subagent prompt",
      "_origin": "ast",
      "community": 34,
      "community_name": "Extraction Specification",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "graphify reference: extraction subagent prompt",
      "source_file": ".agents/skills/graphify/references/extraction-spec.md",
      "source_location": "L1"
    },
    {
      "id": "specify_scripts_powershell_check_prerequisites",
      "label": "check-prerequisites.ps1",
      "_origin": "ast",
      "community": 35,
      "community_name": "Prerequisite Checks",
      "file_type": "code",
      "norm_label": "check-prerequisites.ps1",
      "source_file": ".specify/scripts/powershell/check-prerequisites.ps1",
      "source_location": "L1"
    },
    {
      "id": "specify_scripts_powershell_resolve_template",
      "label": "resolve-template.ps1",
      "_origin": "ast",
      "community": 36,
      "community_name": "Template Resolution",
      "file_type": "code",
      "norm_label": "resolve-template.ps1",
      "source_file": ".specify/scripts/powershell/resolve-template.ps1",
      "source_location": "L1"
    },
    {
      "id": "specify_scripts_powershell_setup_plan",
      "label": "setup-plan.ps1",
      "_origin": "ast",
      "community": 37,
      "community_name": "Plan Setup",
      "file_type": "code",
      "norm_label": "setup-plan.ps1",
      "source_file": ".specify/scripts/powershell/setup-plan.ps1",
      "source_location": "L1"
    },
    {
      "id": "specify_scripts_powershell_setup_tasks",
      "label": "setup-tasks.ps1",
      "_origin": "ast",
      "community": 38,
      "community_name": "Task Setup",
      "file_type": "code",
      "norm_label": "setup-tasks.ps1",
      "source_file": ".specify/scripts/powershell/setup-tasks.ps1",
      "source_location": "L1"
    },
    {
      "id": "agents_workflows_graphify",
      "label": "workflows/graphify.md",
      "_origin": "ast",
      "community": 39,
      "community_name": "Graphify Workflows",
      "file_type": "document",
      "frontmatter": {
        "name": "graphify",
        "description": "Turn any folder of files into a navigable knowledge graph"
      },
      "node_kind": "page",
      "norm_label": "workflows/graphify.md",
      "source_file": ".agents/workflows/graphify.md",
      "source_location": "L1"
    },
    {
      "id": "agents_workflows_graphify_workflow_graphify",
      "label": "Workflow: graphify",
      "_origin": "ast",
      "community": 39,
      "community_name": "Graphify Workflows",
      "file_type": "document",
      "node_kind": "heading",
      "norm_label": "workflow: graphify",
      "source_file": ".agents/workflows/graphify.md",
      "source_location": "L6"
    },
    {
      "id": "agents_skills_speckit_analyze_skill",
      "label": "speckit-analyze/SKILL.md",
      "_origin": "ast",
      "community": 4,
      "community_name": "speckit-analyze/SKILL.md",
      "file_type": "document",
      "frontmatter": {
        "name": "speckit-analyze",
        "description": "Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.",
        "compatibility": "Requires spec-kit project structure with .specify/ directory"
      },
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